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...taatgctttttttcatgttgatcgattacatgatatttcccatgaagataaatcttatggaatccaagcccctcaaaaacgttctttcttctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAAAACTTATACATGAGGCTTATGCACGAGGGAGCTCTGACAACATTACTT
species | Vitis vinifera |
transcript | Vv18s0001g15050.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|45368324|gb|CK906683.1|CK906683
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|349815543|gb|FQ400699.1|FQ400699
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|32245933|gb|CD711752.1|CD711752
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|83274595|gb|DV938692.1|DV938692
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|351023467|gb|FQ432850.1|FQ432850
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|351029448|gb|FQ436842.1|FQ436842
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|349817905|gb|FQ407894.1|FQ407894
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGGCAA-AGTGGAGGACATTATGGATGEST: gi|351044250|gb|FQ447604.1|FQ447604
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGG-CTATAGTGCAGGACATTATGGATG
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|110371845|gb|EC935970.1|EC935970
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|349832452|gb|FQ421013.1|FQ421013
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|349815027|gb|FQ410250.1|FQ410250
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCCAATAAG GAGGCCGTGGCTATGGTGCCAGGAEST: gi|351025872|gb|FQ427884.1|FQ427884
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGC-AGGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|351025088|gb|FQ433505.1|FQ433505
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|32245467|gb|CD711286.1|CD711286
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|351012826|gb|FQ430389.1|FQ430389
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|351030991|gb|FQ439027.1|FQ439027
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|349830246|gb|FQ420506.1|FQ420506
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|110377520|gb|EC942589.1|EC942589
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAEST: gi|351046056|gb|FQ441439.1|FQ441439
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
agataaatcttatggaatccaagcccctcaaaaacgttctttcttctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAAAACTTATACATGAGGCTTATGCACGAGGGAGCTCTGACAACATTACTT
cgttctttcttctgc CT-rich tract
aatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgctttttttcatgttgatcgattacatgatatttcccatgaagataaatcttatggaatccaagcccctcaaaaacgttctttcttctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAAAACTTATACATGAGGCTTATGCACGAGGGAGCTCTGACAACATTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - tcatgtt
- - - - - - - - - - - - -ttacatg
- - - - - - - - - - - - - - - - - - - cccatga
- - - - - - - - - - - - - - - - - - - - - - -agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcccctc