Sequence
atgc intronic sequence ATGC exonic sequencegtattttaattttttttcatccaaaatggcattattgttattattattatcatcatcatcttcattattattattgttgttgttgctataaccattattcttcatatggctagtgccaatcctcataattgatttgaacagGCGGGTGCTTATTTTTCCAAAGGGAAACAATGTTGAACATTTGTCTATGTACTTGGATGTTGCGGATTCATCAAGTTTGCCCTATGGGTGGAGTAGATAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G11300.1 (Glycine max), 3'ss of exon 3
gtattttaattttttttcatccaaaatggcattattgttattattattatcatcatcatcttcattattattattgttgttgttgctataaccattattcttcatatggctagtgccaatcctcataattgatttgaacagGCGGGTGCTTATTTTTCCAAAGGGAAACAATGTTGAACATTTGTCTATGTACTTGGATGTTGCGGATTCATCAAGTTTGCCCTATGGGTGGAGTAGATAT
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------------gtatttttctgagatt-tactaaacttgttaataatggtgttct-attttcttgaatat----gctctggtatgtatacttgtt-ttcagtgtttatctc-tgtcaaacttggttttatgcttgg-cagGCGTGTGCTTATTTTCCCAAAGGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCCACTTTGCCCTATGGTTGGAGTAGATAT
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G16170.1 (Glycine max), 3'ss of exon 3
gtattttaattttttttcatccaaaatggcattattgttattattattatcatcatcatcttcattattattattgttgttgttgctataaccattattcttcatatggctagtgccaatcctcataattgatttgaacagGCGGGTGCTTATTTTTCCAAAGGGAAACAATGTTGAACATTTGTCTATGTACTTGGATGTTGCGGATTCATCAAGTTTGCCCTATGGGTGGAGTAGATAT
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------------gtatttttctgagatt-tactaaacttgttagtaatggtgttct-attttcttgaatat----gctctggtatgtatacttgttttcagtgatt--acctctgccaaacttggt--tttatcttggcagGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCTGATTCAGCCAGTTTGCCCTATGGTTGGAGTAGATAT
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G04890.1 (Glycine max), 3'ss of exon 3
gtattttaattttttttcatccaaaatggcattattgttattattattatcatcatcatcttcattattattattgttgttgttgctataaccattattcttcatatggctagtgccaatcctcataattgatttgaacagGCGGGTGCTTATTTTTCCAAAGGGAAACAATGTTGAACATTTGTCTATGTACTTGGATGTTGCGGATTCATCAAGTTTGCCCTATGGGTGGAGTAGATAT
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----------------------------------------------------gtatcatgctt-ttactctgtctgagttgattaatggtgtgcttatctttaat--gatctcttctgaaccttgttttttact-gggcagGCGTGTACTTATTTTCCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTACCCTATGGCTGGAGTAGATAT
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G43930.1 (Glycine max), 3'ss of exon 3
gtattttaattttttttcatccaaaatggcattattgttattattattatcatcatcatcttcattattattattgttgttgttgctataaccattattcttcatatggctagtgccaatcctcataattgatttgaacagGCGGGTGCTTATTTTTCCAAAGGGAAACAATGTTGAACATTTGTCTATGTACTTGGATGTTGCGGATTCATCAAGTTTGCCCTATGGGTGGAGTAGATAT
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----------------------------------------------------gtatcatgctt-ttactctgtctgagttgattaatgatgtgcttatttttaat--gatctcttctgaaccttgtttttttattgggcagGCGAGTACTCATTTTCCCAAAAGGGAACAACGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTGCCCTATGGCTGGAGTAGATAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataaccattattcttcatatggctagtgccaatcctcataattgatttgaacagGCGGGTGCTTATTTTTCCAAAGGGAAACAATGTTGAACATTTGTCTATGTACTTGGATGTTGCGGATTCATCAAGTTTGCCCTATGGGTGGAGTAGATAT
attattcttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattttaattttttttcatccaaaatggcattattgttattattattatcatcatcatcttcattattattattgttgttgttgctataaccattattcttcatatggctagtgccaatcctcataattgatttgaacagGCGGGTGCTTATTTTTCCAAAGGGAAACAATGTTGAACATTTGTCTATGTACTTGGATGTTGCGGATTCATCAAGTTTGCCCTATGGGTGGAGTAGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG