1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
...ttagttaatttttcttttttaattttctaatttagatgaaagtaaaatgtacatgatccagatttgatcaattttccaatttaacttttaaatattgcagATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTATACCACTTTACAAAAGACACAGCTCAGAACCAAATG
species | Vitis vinifera |
transcript | Vv06s0009g00960.t01 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: AAAAAATTGAGAACATTAATGATCAATACTGGACACTGCGTGCTGAAGAG ATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTAEST: gi|71865499|gb|DT014554.1|DT014554
genomic: AAAAAATTGAGAACATTAATGATCAATACTGGACACTGCGTGCTGAAGAGgtcagttcct ... aatattgcagATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTA
EST: AAAAAATTGAGAACATTAATGATCAATACTGGACACTGCGTGCTGAAGAG ATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTAEST: gi|71857119|gb|DT006174.1|DT006174
genomic: AAAAAATTGAGAACATTAATGATCAATACTGGACACTGCGTGCTGAAGAGgtcagttcct ... aatattgcagATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTA
EST: AAAAAATTGAGAACATTAATGATCAATACTGGACACTGCGTGCTGAAGAG ATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTA
genomic: AAAAAATTGAGAACATTAATGATCAATACTGGACACTGCGTGCTGAAGAGgtcagttcct ... aatattgcagATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTA
aatgtacatgatccagatttgatcaattttccaatttaacttttaaatattgcagATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTATACCACTTTACAAAAGACACAGCTCAGAACCAAATG
atttaac putative branch site (score: 3)
atttgatcaattttcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagttaatttttcttttttaattttctaatttagatgaaagtaaaatgtacatgatccagatttgatcaattttccaatttaacttttaaatattgcagATTCCTGAAGAAGAGAAAAATCTTGGACCACAGGATCGCTTGATTCATGTATACCACTTTACAAAAGACACAGCTCAGAACCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -catgatc