Sequence
atgc intronic sequence ATGC exonic sequencegtaatttattacatggcccatattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacagATTTCGGATGTATTGTACTATGAAGTATTGGACATCCCTCTTCCAGAATTACAAGGTTTAAAAACTTTGAAAGTTGCTTTTCATCATGCTGAAAAGGAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA14G04890.1 (Glycine max), 3'ss of exon 23
gtaatttattacatggccca-tattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacagATTTCGGATGTATTGTACTATGAAGTATTGGACATCCCTCTTCCAGAATTACAAGGTTTAAAAACTTTGAAAGTTGCTTTTCATCATGCTGAAAAGGAGG
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gtaattattgacttgtcccaactttcatcttgtttcttatttaaaaaacaaaacatcttattcct--ttcatgcatgt------cagACTTCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGATTGAAAACTCTGAAAGTTGCATTTCACCATGCAACCAAGGATG
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA02G43930.1 (Glycine max), 3'ss of exon 23
gtaatttattacatggcccatattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacagATTTCGGATGTATTGTACTATGAAGTATTGGACATCCCTCTTCCAGAATTACAAGGTTTAAAAACTTTGAAAGTTGCTTTTCATCATGCTGAAAAGGAGG
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gtaattattgacttattgtccaatctttcaatcttgtttcttatttaaaaacaaagcatcc--tattcctttcatgcatgt--cagACTTCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAACTACAAGGATTGAAAACTCTGAAAGTTGCATTTCACCATGCTACCAAGGATG
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA20G11330.1 (Glycine max), 3'ss of exon 15
gtaatttattacatggcccatattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacagATTTCGGATGTATTGTACTATGAAGTATTGGACATCCCTCTTCCAGAATTACAAGGTTTAAAAACTTTGAAAGTTGCTTTTCATCATGCTGAAAAGGAGG
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gtaact-attgttatattaatcttaatatcttttct-tgaaaaggcaatagatcttattccttttctcaatgt----------cagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTACAAGGGTTGAAAACTCTAAAAGTTGCATTTCATCATGCCACTAAGGAGG
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA13G16040.1 (Glycine max), 3'ss of exon 4
gtaatttattacatggcccatattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacagATTTCGGATGTATTGTACTATGAAGTATTGGACATCCCTCTTCCAGAATTACAAGGTTTAAAAACTTTGAAAGTTGCTTTTCATCATGCTGAAAAGGAGG
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-------gtaactattgttatattaatct-tgatgt-tcatgaaaaggcaatagatctt--attg-----cttttctcaatgtcagACATCGGATATACTATACTATGAAGTACTTGACATCCCTCTACCAGAATTACAAGGGTTGAAAACTCTGAAAGTCGCATTTCATCATGCCACTAAGGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacagATTTCGGATGTATTGTACTATGAAGTATTGGACATCCCTCTTCCAGAATTACAAGGTTTAAAAACTTTGAAAGTTGCTTTTCATCATGCTGAAAAGGAGG
tttattttt CT-rich tract
ttttttcattgatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttattacatggcccatattaatgtatgctctgttttgacatggaaatccttttttcattgatcaatttatttttgggacagATTTCGGATGTATTGTACTATGAAGTATTGGACATCCCTCTTCCAGAATTACAAGGTTTAAAAACTTTGAAAGTTGCTTTTCATCATGCTGAAAAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG