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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagaaaatgctagccttttttggatgttcttgtaaattcttgatcatgtgacttactggttttttttttttttttcttttgttgtggacagGACATTGCCACTAGAGTTATAGCGGAAGAATTGAGGCCAGAACAGACGGTAGTTTCAAAGATTATGACAAGGCATCCAATTTTTGTTAACTCAGATTCGT

Basic information

species Vitis vinifera
transcript Vv07s0031g02750.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G32930.1 (Glycine max), 3'ss of exon 2
gtttgtagaaaatgctagccttttttggatgttcttgtaaattcttgatcatgtgacttactggttttttttttttttttcttttgttgtggacagGACATTGCCACTAGAGTTATAGCGGAAGAATTGAGGCCAGAACAGACGGTAGTTTCAAAGATTATGACAAGGCATCCAATTTTTGTTAACTCAGATTCGT
                 |  | | ||| ||||   ||    |   ||    |||||        ||||      || | | | ||||  |   ||||||||||| ||||||||||||||||| |  ||  |||| || |||||  | || |||||  | |||||  ||  ||| || ||||| |  || ||| || 
-----------------gtgtgtgttgtatgtgtgtgcgtgtgtgtgtgtgtgtga------aattttacaagcttgtgtgtcttgtgtt---cagGACATTGCTACTAGAGTTATAGCGGAGGGTTTACGGCCCGAGCAGACAATGGTGTCAAAAGTAATGACTCGGAGTCCTATATTTGTGACATCTGATACGC

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G00560.3 (Glycine max), 3'ss of exon 2
----------------------------------------------------------------------gtttgtagaaaatgctagccttttttggatgttcttgtaaattcttgatcatgtgacttactggttttttttttttttttcttttg-ttgtggacagGACATTGCCACTAGAGTTATAGCGGAAGAATTGAGGCCAGAACAGACGGTAGTTTCAAAGATTATGACAAGGCATCCAATTTTTGTTAACTCAGATTCGT
                                                                       |      |    | ||| ||   |||        | |||| | ||   |  |     |     | |    ||||     ||| || |||||  ||||||||||| ||||||||||||||||| |  ||| |||| || |||||| | || |||||  | |||||  ||  ||| || ||||| |  || ||   | 
gtttgtgttgtgtgtgcattttttttttacattgaaggcagtgtcaggaggtttataatacctcactctactcaaccaattgagttagactcacttgacaaaaaatataaaatttta--cgggatgtgtgtgtatatgaaattttacaagcttgtgcttgtgttcagGACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATGGTGTCAAAAGTAATGACTCGGAGTCCTATATTTGTGACATCTGACATGC

upper sequence: Vv07s0031g02750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G00560.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------------------gtttgtagaaaatgctagccttttttggatgttcttgtaaattcttgatcatgtgacttactggttttttttttttttttcttttg-ttgtggacagGACATTGCCACTAGAGTTATAGCGGAAGAATTGAGGCCAGAACAGACGGTAGTTTCAAAGATTATGACAAGGCATCCAATTTTTGTTAACTCAGATTCGT
                                                                 |      |    | ||| ||   |||        | |||| | ||   |  |     |     | |    ||||     ||| || |||||  ||||||||||| ||||||||||||||||| |  ||| |||| || |||||| | || |||||  | |||||  ||  ||| || ||||| |  || ||   | 
gttgtgtgtgcattttttttttacattgaaggcagtgtcaggaggtttataatacctcactctactcaaccaattgagttagactcacttgacaaaaaatataaaatttta--cgggatgtgtgtgtatatgaaattttacaagcttgtgcttgtgttcagGACATTGCTACTAGAGTTATAGCGGAGGGTTTGCGGCCCGAGCAGACGATGGTGTCAAAAGTAATGACTCGGAGTCCTATATTTGTGACATCTGACATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgatcatgtgacttactggttttttttttttttttcttttgttgtggacagGACATTGCCACTAGAGTTATAGCGGAAGAATTGAGGCCAGAACAGACGGTAGTTTCAAAGATTATGACAAGGCATCCAATTTTTGTTAACTCAGATTCGT
             gacttac  putative branch site (score: 2)
               cttactggtttttttt  CT-rich tract
                ttactggttttttttt  TA-rich tract