Sequence
atgc intronic sequence ATGC exonic sequencegtaatcaaattttcagttgctttttttcttctttcctttctgggggctggattacctgtcatttgatgttgttgaattcattacctgttatttgatgttgttgaattcatctcatctgtgatctcagTTATGTTGGAAGGCTTTTTGTGAAGAGTACTGGTAAGCCTGTAGAAATTTTGTCAAAACTGAATGAAATGGTTGGTTATGCTCCTGATGAAGAGATTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA14G04890.1 (Glycine max), 3'ss of exon 18
gtaatcaaattttcagttgctttttttcttctttcctttctgggggctggattacctgtc-atttgatgttgttgaattcattacctgtta---tttgatgttgttgaattcatctcatctgtgatctcagTTATGTTGGAAGGCTTTTTGTGAAGAGTACTGGTAAGCCTGTAGAAATTTTGTCAAAACTGAATGAAATGGTTGGTTATGCTCCTGATGAAGAGATTGAA
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-------------------------------------------gtactgagtaatgtctttattttaacatgcgtatgtgataaaaggtgaacctttgttgacataagatgtatttc-cctattgtggcagTTATGCTGGAAGGCTCTTTGTGAAGAGTACTGGTAAGCCATCAGAAATCTTAACCAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGA
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA02G43930.1 (Glycine max), 3'ss of exon 18
gtaatcaaattttcagttgctttttttcttctttcctttctgggggctggattac-ctgtcatttgatgttgttgaattcattacctgtta---tttgatgttgttgaattcatctcatctgtgatctcagTTATGTTGGAAGGCTTTTTGTGAAGAGTACTGGTAAGCCTGTAGAAATTTTGTCAAAACTGAATGAAATGGTTGGTTATGCTCCTGATGAAGAGATTGAA
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-------------------------------------------gtactgagtaatgtttttattttaacatgtggatgtggtaaaaggtgaacctttgttgacataagatgtattttccctattgtggcagTTATGTTGGAAGGCTCTTTGTGAAGGCTACTGGTAAGCCATCAGAAATTTTAACCAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGA
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 18
lower sequence: GLYMA20G11330.1 (Glycine max), 3'ss of exon 10
gtaatcaaattttcagttgctttttttcttctttcctttctgggggctggattacctgtcatttgatgttgttgaattcattacctgttatttgatgttgttgaa--ttcatctcatctgtgatctcagTTATGTTGGAAGGCTTTTTGTGAAGAGTACTGGTAAGCCTGTAGAAATTTTGTCAAAACTGAATGAAATGGTTGGTTATGCTCCTGATGAAGAGATTGAA
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--------------------------------------------------gtactgagtaatttctttattttaacatttttatgtgaggcctaggttaacttaagatttatttca-ctataattgcagTTATGTTGGAAGGCTCTTTGTGAAGTGTACTGGCAAGCCATTGGAAATCTTAACGAGGTTAAATGAAATGGCTGGTTATGACCCTGAAGAAGATATTGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaattcattacctgttatttgatgttgttgaattcatctcatctgtgatctcagTTATGTTGGAAGGCTTTTTGTGAAGAGTACTGGTAAGCCTGTAGAAATTTTGTCAAAACTGAATGAAATGGTTGGTTATGCTCCTGATGAAGAGATTGAA
atttgat putative branch site (score: 5)
ttatttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatcaaattttcagttgctttttttcttctttcctttctgggggctggattacctgtcatttgatgttgttgaattcattacctgttatttgatgttgttgaattcatctcatctgtgatctcagTTATGTTGGAAGGCTTTTTGTGAAGAGTACTGGTAAGCCTGTAGAAATTTTGTCAAAACTGAATGAAATGGTTGGTTATGCTCCTGATGAAGAGATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA