Sequence
atgc intronic sequence ATGC exonic sequence...tgtatatttctatgagtttgctgtcaatttttatgctgtagatattgaagatgctaaactgcttttgtgatttcactgaggtcgatgatgttgtgtgcagTTTCTTCAGGGCTTGGATTTCTCCAGTTCTGTAACCTCAACAGTTTCAGAACAAAGTTCATCCTAGGCTTCTCCATTTTCATGGGCTTTTCAATACCACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA06G04990.1 (Glycine max), 3'ss of exon 12
tgtatatttctatgagtttgctgtcaatttttatgctgtagatattgaagatgctaaactgcttttgtgatttcactgaggtcgatgatgttg--tgtgcagTTTCTTCAGGGCTTGGATTTCTCCAGTTCTGTAACCTCAACAGTTTCAGAACAAAGTTCATCCTAGGCTTCTCCATTTTCATGGGCTTTTCAATACCACA
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-----------gtaagttctctctaactatctgtctttgtagctttggcaatccatag----------aacttgacaagagtttgcaacttgggatgtgcagCTTCTGCAGGTCTTGATTTTCTCCAGTTCTGTAACCTCAACAGTTTCAGAATCAAATTCGTGTTGGGCCTGTCATTCTTCCTTGGCATCTCCATACCACA
upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA04G04890.1 (Glycine max), 3'ss of exon 13
tgtatatttctatgagtttgctgtcaatttttatgctgtagatattgaagatgctaaactgcttttgtgatttcactgaggtcgatgatgttg--tgtgcagTTTCTTCAGGGCTTGGATTTCTCCAGTTCTGTAACCTCAACAGTTTCAGAACAAAGTTCATCCTAGGCTTCTCCATTTTCATGGGCTTTTCAATACCACA
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-----------gtaagttctctctaaccatctgtctt--------tgtagct--ttggcaacccatagaacttgacaagagtttgcaacttgggatgtgcagCTTCTGCAGGTCTTGATTTTCTACAGTTCTGTAATCTCAACAGTTTCAGAACCAAATTCGTGTTGGGTCTCTCATTCTTCCTCGGCATCTCCATTCCGCA
upper sequence: Vv18s0001g08930.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA14G09920.1 (Glycine max), 3'ss of exon 13
tgtatatttctatgagtttgctgtcaatttttatgctgtagatattgaagatgctaaactgcttttgtgatttcactgaggtcgatgatgttgtgtgcagTTTCTTCAGGGCTTGGATTTCTCCAGTTCTGTAACCTCAACAGTTTCAGAACAAAGTTCATCCTAGGCTTCTCCATTTTCATGGGCTTTTCAATACCACA
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-gtaagttccctctaattaatagtc----tttgtgtt-tgcatatagataggacttaacagtgttggttactattttgggat------------gtgtagCTTCTGCGGGTCTTGGTTTTCTCCAATTCTGTAACCTCAACAATTTCAGAACCAAATTTGTGTTGGGCTTCTCATTCTTCCTAGGCCTCTCCATACCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaagatgctaaactgcttttgtgatttcactgaggtcgatgatgttgtgtgcagTTTCTTCAGGGCTTGGATTTCTCCAGTTCTGTAACCTCAACAGTTTCAGAACAAAGTTCATCCTAGGCTTCTCCATTTTCATGGGCTTTTCAATACCACA
tgctaaa putative branch site (score: 2)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtatatttctatgagtttgctgtcaatttttatgctgtagatattgaagatgctaaactgcttttgtgatttcactgaggtcgatgatgttgtgtgcagTTTCTTCAGGGCTTGGATTTCTCCAGTTCTGTAACCTCAACAGTTTCAGAACAAAGTTCATCCTAGGCTTCTCCATTTTCATGGGCTTTTCAATACCACA
- - - - -ctatgag
- - - - - - - - - - ctgtcaa
- - - - - - - - - - - - - - - -tatgctg