Sequence
atgc intronic sequence ATGC exonic sequence...actgaacattcgggaatagtatatatcaagtttttgatgctttattgatgcaaaatggatactattgtttatctcttacacattttgacgttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G071441_T02 (Zea mays), 3'ss of exon 6
--------actgaacattcgggaatagtatatatcaagtttttgatgctttattgatgcaaaatggatactattgtttatctcttacacattttgacgttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
| | || || || || ||| ||||| || || | | || ||||| | | || || | || | || || ||||| || ||||| ||||| ||||| ||||| ||||| |||||||||||||| | || | || |||||||| ||
aattacgtattagctgtttaggtgcag-atttat-gggttttcaatttttgagagctgtt---tggatcttttgtagtaatatttgtagcttctc---ttcaatgcagTGTACTGGTTCATAGTGGTGGAGTTCATGGAGGACACTATTATGCCTTTATTCGTCCGAAGCTGTCTGATCAATG
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G11330.1 (Glycine max), 3'ss of exon 2
actgaacattcgggaatagtatatatcaagtttttgatgctttattg-atgcaaaatggatactattgtttatctcttacacattttgacgttgtt-tgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
| | || | | || | || | | ||| || ||||| | | || || | | ||| | ||| | || || | |||||| | ||||||||||| || ||||||||||||||||||||||| ||||| || || ||||| ||||| |||||
--ttctctttatccattctaatgaaggaattgctatccaatttgttttatgcatatttaatctatgaagttctgcttaacatactttaaaatttttctccagTGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACCCTCTCTGAACAGTG
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G04890.1 (Glycine max), 3'ss of exon 10
-actgaacattcgggaatagtatatatcaagtttttgatgctttattgatgcaaaatggatactat--tgtttatctctt-acacattttgacgttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
|||| || | |||| | ||| | ||| | | | | ||||| | | || |||| || || ||| |||| | || | || ||| | ||||||||||| || ||||||||||||||||||||||| ||||| || || || || ||||| |||||
tgctgatgatgtct-attagtgtg---caattatttctttttatgtgaatgcatatttttatctgcgatgttcattatttgacagatttaaattttttccacagCGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCGACTCTATCTGAGCAGTG
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G43930.1 (Glycine max), 3'ss of exon 10
--actgaacattcgggaatagtatatatcaagtttttgatgctttattgatgcaaaatggatactat--tgtttatctcttacacattttgacgttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
|||| || | |||| | ||| | |||| | | | | ||||| | | || | ||| || || | || || | || ||| | ||||||||||| || ||||||||||||||||||||||| ||||| || || || || ||||| |||||
gggctgatgatgtcc-attagtgtg---caattatttgtttttatgtgaatgcatatttttatctgtgatgtgcattatttgaccgattattttttttccacagCGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACTCTATCTGAGCAGTG
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 3'ss of exon 10
-----------------------------------------------actgaacattcgggaatagt-atatatcaagttttt-------gatgcttta--ttgatgcaaaatggatactattgttt-atctcttac--acattttgacgttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
| |||| | || | || || | ||||| || | | | ||| |||||| || || | | | | || | |||| ||| | | ||||| || ||||||||||| ||||| |||||||| ||||| || || ||||| |||||||| || ||||| |||||
gtttggggcataatcattcgattctcgtgttaatgttttcctgatgttttatacatccctttttacttattaatttatttttttcttacagaaggtgtgccttgtgccaaaatttattgcatcgcctcaattgatattggcttttttttgttcgtggcagTGTACTGGTTCACAGTGGTGGAGTACATGGTGGTCATTACTACGCTTTTATCAGACCCACACTCTCTGACCAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110388155|gb|EC952874.1|EC952874EST: TTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAG TGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTAT
genomic: TTATCTCCTGATGCCAATAGGACTGTTCGCAACCTTTACGCCCTTCACAGgtattagtaa ... ttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatgcaaaatggatactattgtttatctcttacacattttgacgttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
ttttgac putative branch site (score: 3)
atactattgtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actgaacattcgggaatagtatatatcaagtttttgatgctttattgatgcaaaatggatactattgtttatctcttacacattttgacgttgtttgtagTGTTCTAGTTCACAGTGGCGGAGTGCATGGTGGACATTATTATGCCTTTATAAGACCCACCCTTTCTGATCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - gatgcaa