1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcggggtgtttgatcgatctttgactgttttctgccggtgctctcagggtttgcgttccataatttggggtgttttgatgtgttcttggttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTGAGGAATTTGGAGCGAGCAACCAAGGCCTTGGATTCCACAA
species | Selaginella moellendorffii |
transcript | EFJ23867 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGGATGAAGGTGCTAGTCGTCGGGAGTAGCAGCGGCTGCGGCCTCGAG GTCGCGAAATTGCTCGCCGCGTCTGAGGAGTTTGAAGTGTTTGCGCTCGTGEST: gi|70670011|gb|DN838588.1|DN838588
genomic: GAGGGATGAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAGgtatggcgct ... ttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTG
EST: GAGGGATGAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAG GTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTGEST: gi|169026943|gb|FE434268.1|FE434268
genomic: GAGGGATGAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAGgtatggcgct ... ttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTG
EST: GAGGGATGAAGGTGCTAGTCGTCGGGAGTAGCAGCGGCTGCGGCCTCGAG GTCGCGAAATTGCTCGCCGCGTCTGAGGAGTTTGAAGTGTTTGCGCTCGTGEST: gi|169107432|gb|FE504180.1|FE504180
genomic: GAGGGATGAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAGgtatggcgct ... ttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTG
EST: GAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAG GTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTGEST: gi|169099246|gb|FE502071.1|FE502071
genomic: GAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAGgtatggcgct ... ttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTG
EST: GAGGGATGAAGGTGCTAGTCGTCGGGAGTAGCAGCGGCTGCGGCCTCGAG GTCGCGAAATTGCTCGCCGCGTCTGAGGAGTTTGAAGTGTTTGCGCTCGTGEST: gi|169041186|gb|FE450421.1|FE450421
genomic: GAGGGATGAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAGgtatggcgct ... ttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTG
EST: GAGGGATGAAGGTGCTAGTCGTCGGGAGTAGCAGCGGCTGCGGCCTCGAG GTCGCGAAATTGCTCGCCGCGTCTGAGGAGTTTGAAGTGTTTGCGCTCGTG
genomic: GAGGGATGAAGGTGCTAGTCGTCGGGAGCAGCAGCGGCTGCGGCCTCGAGgtatggcgct ... ttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTG
cagggtttgcgttccataatttggggtgttttgatgtgttcttggttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTGAGGAATTTGGAGCGAGCAACCAAGGCCTTGGATTCCACAA
ttttgat putative branch site (score: 69)
ttcttggttctttcc putative PPT
ataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcggggtgtttgatcgatctttgactgttttctgccggtgctctcagggtttgcgttccataatttggggtgttttgatgtgttcttggttctttccagGTCGCGAAATTGCTCGCCGCGTCCGAGGAGTTTGAAGTGTATGCTCTCGTGAGGAATTTGGAGCGAGCAACCAAGGCCTTGGATTCCACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - -tttgatc
- - - - - - - - gatcttt
- - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - -tgctctc
- - - - - - - - - - - - - - - - - - - - - - - - - tttgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtttt