1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtggttcattatgcagtgctttaaagatgttgctttgaaaggttgtagtttgttcgaatctgatgagagctctagtgttgttcttttttctttccttcgggtgactgttgggttgattaaaagaattcacggagatcagtttctgagagtactgtgcaattcatgcgtatctttttgtttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACTTGAATACGAACGTTATATGAAGCCTGAAGAAACTGAGGAAACCGTGTCC
species | Physcomitrella patens |
transcript | PP1S41_98V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAG TTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACTEST: gi|37844762|gb|BJ602770.1|BJ602770
genomic: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAGgtatgtggtt ... tttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACT
EST: GCATTNGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAG TTACTACAGGTGTTCATTNGNTGGAAAGGAAGGTGGAGAAATGGTACAACTEST: gi|162161042|gb|FC337534.1|FC337534
genomic: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAGgtatgtggtt ... tttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACT
EST: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAG TTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACTEST: gi|37821613|gb|BJ579679.1|BJ579679
genomic: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAGgtatgtggtt ... tttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACT
EST: GCATTCGGGTCTATGAAGAATACGATTGTTATTGCNTGTGCCAACGGGAG TTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACTEST: gi|162161043|gb|FC337535.1|FC337535
genomic: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAGgtatgtggtt ... tttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACT
EST: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAG TTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACT
genomic: GCATTCGGGTCTATGAAGAATACGATTGTTATTGTGTGTGCCAACGGGAGgtatgtggtt ... tttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACT
agatcagtttctgagagtactgtgcaattcatgcgtatctttttgtttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACTTGAATACGAACGTTATATGAAGCCTGAAGAAACTGAGGAAACCGTGTCC
tctttttgtttgct CT-rich tract
tatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggttcattatgcagtgctttaaagatgttgctttgaaaggttgtagtttgttcgaatctgatgagagctctagtgttgttcttttttctttccttcgggtgactgttgggttgattaaaagaattcacggagatcagtttctgagagtactgtgcaattcatgcgtatctttttgtttgctgcagTTACTACAGGTGTTCATTTGATGGAAAGGAGGGTGGAGAAATGGTACAACTTGAATACGAACGTTATATGAAGCCTGAAGAAACTGAGGAAACCGTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA