1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgttaatcttgcactctgggactaaaaaatcactgataatctaggactttctgaaattaaacgttttcagatccacgtgtgtttaccatgttagatgctggattcgttggtatgctgattttcacttctgtttctatttaatagGCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCACCAGATTTTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTC
species | Physcomitrella patens |
transcript | PP1S206_15V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAG GCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCAEST: gi|37827316|gb|BJ585328.1|BJ585328
genomic: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAGgtgtgttaat ... tatttaatagGCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCA
EST: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAG GCTTCTAGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCAEST: gi|37825057|gb|BJ583123.1|BJ583123
genomic: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAGgtgtgttaat ... tatttaatagGCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCA
EST: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAG GCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCAEST: gi|37828979|gb|BJ586991.1|BJ586991
genomic: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAGgtgtgttaat ... tatttaatagGCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCA
EST: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAG GCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCA
genomic: CTGGCAAACTCATCACATTGTTTAGTGCCCCTGATTATCCTCAGTTTCAGgtgtgttaat ... tatttaatagGCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCA
gttagatgctggattcgttggtatgctgattttcacttctgtttctatttaatagGCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCACCAGATTTTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTC
tgctgat putative branch site (score: 3)
ttttcacttctgtttc CT-rich tract
tgtttctatttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttaatcttgcactctgggactaaaaaatcactgataatctaggactttctgaaattaaacgttttcagatccacgtgtgtttaccatgttagatgctggattcgttggtatgctgattttcacttctgtttctatttaatagGCTTCTGGGGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCACCAGATTTTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT