1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtcacgtctttcaatcggtatttcttccttaaaatttacttccacatttcaaaattcatgctcaatttctacgaactcaggttcgtggaattatactttgcagGTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAAGAGTACTTTGATGACCGAGAAGAATGCCGAGAAGCTTTGCAGCATGTCG
species | Physcomitrella patens |
transcript | PP1S101_215V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTATAGCAGTCCGTGCTGGTGTGGCCATGGGGGAAGAAGGTGATGCCGTG GTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAAEST: gi|162175466|gb|FC351742.1|FC351742
genomic: CTATAGCAGTCCGTGCTGGTGTGGCCATGGGGGAAGAAGGTGATGCCGTGgtaagtcacg ... tactttgcagGTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAA
EST: CTATAGCAGTCCGTGCTGGTGTGGCCATGGGGGAAGAAGGTGATGCCGTG GTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATGGGAGACAACAAAEST: gi|162149662|gb|FC326713.1|FC326713
genomic: CTATAGCAGTCCGTGCTGGTGTGGCCATGGGGGAAGAAGGTGATGCCGTGgtaagtcacg ... tactttgcagGTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAA
EST: CTATAGCAGTCCGTGCTGGTGTGGCCATGGGGGAAGAAGGTGATGCCGTG GTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAA
genomic: CTATAGCAGTCCGTGCTGGTGTGGCCATGGGGGAAGAAGGTGATGCCGTGgtaagtcacg ... tactttgcagGTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAA
tcaaaattcatgctcaatttctacgaactcaggttcgtggaattatactttgcagGTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAAGAGTACTTTGATGACCGAGAAGAATGCCGAGAAGCTTTGCAGCATGTCG
aattatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcacgtctttcaatcggtatttcttccttaaaatttacttccacatttcaaaattcatgctcaatttctacgaactcaggttcgtggaattatactttgcagGTGATAGCTGGGAAAGGCCATAATACGTATGAAATAATTGGAGACAACAAAGAGTACTTTGATGACCGAGAAGAATGCCGAGAAGCTTTGCAGCATGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC