1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacttggaaggaccctgctgtcggcagtatgtttcgttatgtgaaattaatttcatcgtctacttcagaataccaggaacgttttcgtgaagtattgtgcgtttatcaaatccacaatgtattttgatgggtgcatacagtgcaggtacttaagctgtgtgatgctttgaatgtttgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTGAGATTAGTGGAGGCAACCAAGTGGATTCAACTGCGTTTTACCTGTGCC
species | Physcomitrella patens |
transcript | PP1S9_162V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAG TGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTEST: gi|18356455|gb|BJ188514.1|BJ188514
genomic: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAGgtacttggaa ... tgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGT
EST: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAG TGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTEST: gi|100447259|gb|CJ971558.1|CJ971558
genomic: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAGgtacttggaa ... tgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGT
EST: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAG TGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTEST: gi|208370621|gb|DC936137.1|DC936137
genomic: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAGgtacttggaa ... tgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGT
EST: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAG TGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTEST: gi|67712638|gb|BJ966087.1|BJ966087
genomic: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAGgtacttggaa ... tgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGT
EST: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAG TGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTEST: gi|208353685|gb|DC949761.1|DC949761
genomic: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAGgtacttggaa ... tgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGT
EST: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAG TGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGT
genomic: GTGTGCAAATATACCGCGAAAAGGATCCCGACAGCTTCGACGGAAAGGAGgtacttggaa ... tgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGT
gtgcatacagtgcaggtacttaagctgtgtgatgctttgaatgtttgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTGAGATTAGTGGAGGCAACCAAGTGGATTCAACTGCGTTTTACCTGTGCC
tacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttggaaggaccctgctgtcggcagtatgtttcgttatgtgaaattaatttcatcgtctacttcagaataccaggaacgttttcgtgaagtattgtgcgtttatcaaatccacaatgtattttgatgggtgcatacagtgcaggtacttaagctgtgtgatgctttgaatgtttgtgcgacagTGGGTAGGCTGCGACAATCGGACTTGTCGACGCTGGGTGCATGTGGAATGTGAGATTAGTGGAGGCAACCAAGTGGATTCAACTGCGTTTTACCTGTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA