1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgccttggaatcctatttcccatgttcgcgctctgatttggtaacctgaaaaatgtaaagacgcatgttttgtaagctaataaggaatttcatattcttgtggttggctattgtaatgctgaaaagttgccttgttaacaaaccttggacgccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATTGGCGTAAAAAAGCTCAGAAAGATCTCGAG
species | Physcomitrella patens |
transcript | PP1S99_180V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCT GGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATEST: gi|37829371|gb|BJ587383.1|BJ587383
genomic: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCTgtgagtgcct ... gccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAAT
EST: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCT GGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATEST: gi|208374931|gb|DC956369.1|DC956369
genomic: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCTgtgagtgcct ... gccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAAT
EST: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCT GGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATEST: gi|37830570|gb|BJ588582.1|BJ588582
genomic: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCTgtgagtgcct ... gccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAAT
EST: GTGGGATTGTTTACACTGTAGCT GGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATEST: gi|37833520|gb|BJ591532.1|BJ591532
genomic: GTGGGATTGTTTACACTGTAGCTgtgagtgcct ... gccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAAT
EST: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCT GGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATEST: gi|37836701|gb|BJ594709.1|BJ594709
genomic: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCTgtgagtgcct ... gccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAAT
EST: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCT GGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAAT
genomic: AATTAGCTAGCTGGTGGCTGTTCGGCTGTGGGATTGTTTACACTGTAGCTgtgagtgcct ... gccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAAT
ggctattgtaatgctgaaaagttgccttgttaacaaaccttggacgccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATTGGCGTAAAAAAGCTCAGAAAGATCTCGAG
tgttaac putative branch site (score: 10)
ttaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgccttggaatcctatttcccatgttcgcgctctgatttggtaacctgaaaaatgtaaagacgcatgttttgtaagctaataaggaatttcatattcttgtggttggctattgtaatgctgaaaagttgccttgttaacaaaccttggacgccattgcagGGATTTCTGTGTTTGGGCAGCATCAAGCGGAACCATCTTAAGAGACAGAATTGGCGTAAAAAAGCTCAGAAAGATCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA