1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagacttctccatcttgcgctgtgctatggttttatatcatctaagtacaaatggttggaaattattgatgcaggtattcagctcacgttctgatgaggaaaatgtggaagggatcgtgacttaacttgtcaattacactttaaaatctatgccttttatcacattgcagGCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGCAAATTGACTTCCCAAAATTGGGGGTTTCATGCATGGTACAGTAATGAGA
species | Physcomitrella patens |
transcript | PP1S504_13V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACG GCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGCEST: gi|162191322|gb|FC367104.1|FC367104
genomic: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACGgtaagacttc ... cacattgcagGCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGC
EST: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACG GCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGCEST: gi|67701130|gb|BJ961363.1|BJ961363
genomic: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACGgtaagacttc ... cacattgcagGCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGC
EST: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACG GCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGCEST: gi|208351930|gb|DC917963.1|DC917963
genomic: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACGgtaagacttc ... cacattgcagGCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGC
EST: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACG GCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGCEST: gi|67693859|gb|BJ954092.1|BJ954092
genomic: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACGgtaagacttc ... cacattgcagGCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGC
EST: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACG GCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGC
genomic: TGCGCATCCTTTCTTTTCGTTCAGAGTGCAGCCAATCTAAAACTTACACGgtaagacttc ... cacattgcagGCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGC
cgtgacttaacttgtcaattacactttaaaatctatgccttttatcacattgcagGCTGGAGATGCAATGAATACGTCACATTGAAAAAGATCGCAAGCATAAAGCAAATTGACTTCCCAAAATTGGGGGTTTCATGCATGGTACAGTAATGAGA
acttaac putative branch site (score: 38)
ccttttatc putative PPT
aattacactttaaaat TA-rich tract