1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaatttaattgctggatcagaggatttgaattttatgtacgaattatgtacaagctcttcactgatttttcaaagcaggcgcatcacattatggagattacatgctgacttttgtaactggagctatttcacgcaagtgaccatattcatgtgcaattgtaacatggtgtttaaatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAATCCACTCAGAGGGCAGCTGCTATGGCTGCTCTTTCATCACAATTGACCT
species | Physcomitrella patens |
transcript | PP1S100_30V6.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAG ACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAAEST: gi|100388954|gb|BY988830.1|BY988830
genomic: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAGgtaatttaat ... aatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
EST: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAG ACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAAEST: gi|162184987|gb|FC362433.1|FC362433
genomic: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAGgtaatttaat ... aatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
EST: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAG ACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAAEST: gi|100406380|gb|BY955598.1|BY955598
genomic: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAGgtaatttaat ... aatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
EST: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAG ACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAAEST: gi|162228276|gb|FC404056.1|FC404056
genomic: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAGgtaatttaat ... aatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
EST: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAG ACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAAEST: gi|37844237|gb|BJ602245.1|BJ602245
genomic: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAGgtaatttaat ... aatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
EST: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAG ACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAAEST: gi|162190395|gb|FC365409.1|FC365409
genomic: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAGgtaatttaat ... aatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
EST: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAG ACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
genomic: CATATGCCCAAAAGATTGCTGATATTCAGGCGCGACAAGCACCTCAAGAGgtaatttaat ... aatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAA
tcacgcaagtgaccatattcatgtgcaattgtaacatggtgtttaaatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAATCCACTCAGAGGGCAGCTGCTATGGCTGCTCTTTCATCACAATTGACCT
ttgtaac putative branch site (score: 7)
tgtttaaatatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttaattgctggatcagaggatttgaattttatgtacgaattatgtacaagctcttcactgatttttcaaagcaggcgcatcacattatggagattacatgctgacttttgtaactggagctatttcacgcaagtgaccatattcatgtgcaattgtaacatggtgtttaaatatttcagACACTCCAAAGGCGTCTTACACCAAGTGCTTCAGCCGGTACTAAAAGTGAATCCACTCAGAGGGCAGCTGCTATGGCTGCTCTTTCATCACAATTGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT