1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaacaataagcgtgttttctcctgccactacatcattcatttaggatatagaacaagtaattaggcgttaccgtttgactttggaaactatatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAGTGGATGCTGTGCCAGGGAGATGTGAGCTGATTGACGAAGAACAAGCGTT
species | Physcomitrella patens |
transcript | PP1S101_215V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTEST: gi|162175467|gb|FC351743.1|FC351743
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCT
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAGEST: gi|162206881|gb|FC382743.1|FC382743
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAGEST: gi|162149663|gb|FC326714.1|FC326714
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
EST: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCG GTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
genomic: GCTGCTAGGGCGACACAACGTGTACAATATTCTCGCTGCCGTTGCAGTCGgtgagctgct ... atatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAG
gatatagaacaagtaattaggcgttaccgtttgactttggaaactatatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAGTGGATGCTGTGCCAGGGAGATGTGAGCTGATTGACGAAGAACAAGCGTT
gtttgac putative branch site (score: 4)
aagtaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacaataagcgtgttttctcctgccactacatcattcatttaggatatagaacaagtaattaggcgttaccgtttgactttggaaactatatgtgtagGTATTGCTGTGGATGCTCCTCTAGAGGACATAGTTCGGGGTATCGAGGAAGTGGATGCTGTGCCAGGGAGATGTGAGCTGATTGACGAAGAACAAGCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC