1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagtttgcccttcaatttgaacttgatgctctaatagcgatccttcaatttgaaatgatcttgaacaatctgtaaatagttgtatgctagtattcagaaacttgactgcacgatttttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG
species | Physcomitrella patens |
transcript | PP1S50_114V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCT ATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTEST: gi|67701518|gb|BJ961751.1|BJ961751
genomic: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCTgtgagtttgc ... ttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
EST: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCT ATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTEST: gi|208394706|gb|DC903962.1|DC903962
genomic: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCTgtgagtttgc ... ttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
EST: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCT ATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTEST: gi|67695428|gb|BJ955661.1|BJ955661
genomic: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCTgtgagtttgc ... ttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
EST: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCT ATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTEST: gi|208380999|gb|DC919881.1|DC919881
genomic: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCTgtgagtttgc ... ttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
EST: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCT ATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTEST: gi|208375107|gb|DC944846.1|DC944846
genomic: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCTgtgagtttgc ... ttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
EST: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCT ATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTEST: gi|162258284|gb|FC434683.1|FC434683
genomic: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCTgtgagtttgc ... ttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
EST: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCT ATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
genomic: GGGACTGTGGCCTGCCATCGGCTTATTTGGAGATAACGTTCTAGTTGCTgtgagtttgc ... ttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGT
gtaaatagttgtatgctagtattcagaaacttgactgcacgatttttctgcgcagATTTTTTATGTGTTGGGTTGCGTCTTTTTCTCACTTGAGTTGTTGTTGAGTATCTGGGTTATTAAG
acttgac putative branch site (score: 4)
tttttctgc putative PPT
atttttct TA-rich tract