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gtaaagaaatccttgacacaattcctgctttgtgggtctactgcttcgatgagaccacgcaagggataagggtgtgtttgtttatttgttttgatgaggaatttgttatggtttttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAAAGAAGTCAAGGAAAGTTCCGTTAATTCGTGCTTGGTGTTACTCTGCTC
species | Physcomitrella patens |
transcript | PP1S93_48V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18358528|gb|BJ190587.1|BJ190587
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18374763|gb|BJ206341.1|BJ206341
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18331389|gb|BJ163400.1|BJ163400
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18359969|gb|BJ192030.1|BJ192030
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18362025|gb|BJ194092.1|BJ194092
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18371212|gb|BJ202814.1|BJ202814
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18371996|gb|BJ203598.1|BJ203598
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18328907|gb|BJ160913.1|BJ160913
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18367560|gb|BJ199643.1|BJ199643
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18328188|gb|BJ160192.1|BJ160192
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18368771|gb|BJ200856.1|BJ200856
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18365813|gb|BJ197891.1|BJ197891
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAEST: gi|18373515|gb|BJ205093.1|BJ205093
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
EST: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAG GTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
genomic: CATTCGCAGTGAGACACCTTTCAAAGGCACCAAGCGAGGGTGTGGCGAAGgtaaagaaat ... ttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCA
gggtgtgtttgtttatttgttttgatgaggaatttgttatggtttttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAAAGAAGTCAAGGAAAGTTCCGTTAATTCGTGCTTGGTGTTACTCTGCTC
ttttgat putative branch site (score: 7)
tttttgt putative PPT
tttgtttatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaaatccttgacacaattcctgctttgtgggtctactgcttcgatgagaccacgcaagggataagggtgtgtttgtttatttgttttgatgaggaatttgttatggtttttgtgttcagGTGGCTGTGGAGCATGTGTGGTAATGTTGGCGAGGTACAACCCTGTCACCAAAGAAGTCAAGGAAAGTTCCGTTAATTCGTGCTTGGTGTTACTCTGCTC
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