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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcactaggaatcatttttcctctgccctgaacatgtgtctcagcagatgtactactggtgtctgttaactaagcttgtttttaatatcccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATTCTTTGTCCAAGAATATCGTAGGTGGGATTAATGGCTCATGATTCGGGCA

Basic information

species Physcomitrella patens
transcript PP1S92_5V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208391814|gb|DC937990.1|DC937990
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|67569631|gb|BJ942455.1|BJ942455
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|18369231|gb|BJ201316.1|BJ201316
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|100396667|gb|BY990239.1|BY990239
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|18353461|gb|BJ185516.1|BJ185516
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|208348375|gb|DC905561.1|DC905561
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|67572682|gb|BJ945506.1|BJ945506
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
EST: gi|100406333|gb|BY955575.1|BY955575
EST:     CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAG                         GAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT
genomic: CTGTTTCTGCTGGATCATCTTTTCTGTCACTGCGCCAGCCCCTGCCAGAGgtggctatcg ... ccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatgtactactggtgtctgttaactaagcttgtttttaatatcccttctgcagGAAGTGTGACATTTTAAAAACATGCACTGATCGTTGGCGGGAATATCCATTCTTTGTCCAAGAATATCGTAGGTGGGATTAATGGCTCATGATTCGGGCA
                                         tatcccttct  CT-rich tract
                               ttgtttttaatat  TA-rich tract