1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcacaagtctttgctgctgattccccatggttgatattgcaaattaaattagtaaaatctcgttctagcaaatgcatatgctcagatctaatctattgagaaatgaagaacatataaccgaatgcaaatatgtgaccggacgattcgttcatcagATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCC
species | Oryza sativa |
transcript | LOC_Os01g21630.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAG ATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAEST: gi|86504593|gb|CI147226.1|CI147226
genomic: GCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGgtatgcacaa ... cgttcatcagATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGA
EST: ACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAG ATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAEST: gi|86501446|gb|CI144079.1|CI144079
genomic: ACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGgtatgcacaa ... cgttcatcagATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGA
EST: GCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAG ATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAEST: gi|87020132|gb|CI277864.1|CI277864
genomic: GCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGgtatgcacaa ... cgttcatcagATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGA
EST: GCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAG ATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGA
genomic: GCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGgtatgcacaa ... cgttcatcagATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGA
aaatgaagaacatataaccgaatgcaaatatgtgaccggacgattcgttcatcagATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCC
atataac putative branch site (score: 4)
ttcgttc putative PPT
aacatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcacaagtctttgctgctgattccccatggttgatattgcaaattaaattagtaaaatctcgttctagcaaatgcatatgctcagatctaatctattgagaaatgaagaacatataaccgaatgcaaatatgtgaccggacgattcgttcatcagATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG