1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtggccatatgattaagcacagcctttttttttggcaatttcttttattattacaaatgagttgagggtctctgctgatatttactattcctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTG
species | Oryza sativa |
transcript | LOC_Os11g03470.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATAAGATTTGAATCTACT GTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTEST: gi|29685331|gb|CB681606.1|CB681606
genomic: CATAAGATTTGAATCTACTgtatgcatac ... ctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT
EST: ATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACT GTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTEST: gi|46573748|gb|CN487730.1|CN487730
genomic: ATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTgtatgcatac ... ctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT
EST: AAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACT GTCGGAGCCGGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT
genomic: AAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTgtatgcatac ... ctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT
tattattacaaatgagttgagggtctctgctgatatttactattcctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTG
tgctgat putative branch site (score: 3)
ctattcctactctt putative PPT
tgatatttactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggccatatgattaagcacagcctttttttttggcaatttcttttattattacaaatgagttgagggtctctgctgatatttactattcctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCTGGAGATCCAGTTTCTCGTATTGTTGGCAGTCTGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC