1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgccttttgattctttcaccttgtattcttgtggccactttctatgtgtgttactgttcatcactttgttctgtttgtgcagATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGG
species | Oryza sativa |
transcript | LOC_Os01g74640.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAG ATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAEST: gi|29682716|gb|CB678991.1|CB678991
genomic: ATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGgtgccttttg ... gtttgtgcagATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTA
EST: ATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAG ATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAEST: gi|33684429|gb|CF312668.1|CF312668
genomic: ATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGgtgccttttg ... gtttgtgcagATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTA
EST: ATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAG ATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTA
genomic: ATGCTATAATTAATGCTACCGAGTTGGCCAGCTACGACCAACTCAAACAGgtgccttttg ... gtttgtgcagATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTA
cttgtggccactttctatgtgtgttactgttcatcactttgttctgtttgtgcagATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGG
ttctgttt CT-rich tract
tttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccttttgattctttcaccttgtattcttgtggccactttctatgtgtgttactgttcatcactttgttctgtttgtgcagATGTTTCTAAAACTTCCTGGGTTTACTGATAACGTTTTTACCCATCTTTTAGCTGGACTTGGTGCTGGATTTTTTGCTGTTTGCATTGGCTCTCCAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT