1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caactctttttccaaagttttgttatattgataaaatttgattggtggttttgttctttttacagtatctgtcacgctctcatctttcaattgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGAGAACGGAGGAGATGGTCATTTTGATACTGAGATTTGGATTATTATTTC
species | Oryza sativa |
transcript | LOC_Os01g16030.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88510648|gb|CI438154.1|CI438154
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|86870888|gb|CI326714.1|CI326714
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88439804|gb|CI541361.1|CI541361
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88511231|gb|CI438737.1|CI438737
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88323630|gb|CI556261.1|CI556261
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88661093|gb|CI450226.1|CI450226
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|86526009|gb|CI166215.1|CI166215
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88510108|gb|CI437614.1|CI437614
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88475381|gb|CI412652.1|CI412652
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|396941528|gb|HO188737.1|HO188737
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88440306|gb|CI549187.1|CI549187
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88489531|gb|CI426803.1|CI426803
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|86825487|gb|CI360103.1|CI360103
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAAC-AG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88284844|gb|CI406290.1|CI406290
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88661493|gb|CI455632.1|CI455632
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88662713|gb|CI473255.1|CI473255
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88663339|gb|CI480406.1|CI480406
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88486537|gb|CI423808.1|CI423808
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATACCAGTTGCATTTTCTGGEST: gi|88475737|gb|CI413008.1|CI413008
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88661880|gb|CI461762.1|CI461762
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGCCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88289060|gb|CI520390.1|CI520390
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88475917|gb|CI413188.1|CI413188
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88518078|gb|CI445732.1|CI445732
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88486800|gb|CI424071.1|CI424071
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGEST: gi|88512596|gb|CI440102.1|CI440102
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
EST: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAG GCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
genomic: AGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGgtagttccta ... ttgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGG
tggttttgttctttttacagtatctgtcacgctctcatctttcaattgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGAGAACGGAGGAGATGGTCATTTTGATACTGAGATTTGGATTATTATTTC
aattgac putative branch site (score: 3)
ttcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caactctttttccaaagttttgttatattgataaaatttgattggtggttttgttctttttacagtatctgtcacgctctcatctttcaattgactgcagGCCTGATTGGATGACCAGAATACCACATTACATAGCAGTTGCATTTTCTGGAGAACGGAGGAGATGGTCATTTTGATACTGAGATTTGGATTATTATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG