1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtatgtcaaatgctaatatcgtgtctatttgaaacacaaatggattggttctataactaatccatcaacttctccatttctgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTGACAACATTGAGAACACCCTGTCCCTTGCTCTAGTTGACACAGCAAGGC
species | Oryza sativa |
transcript | LOC_Os01g39310.3 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCT TCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTEST: gi|157650537|gb|EX450171.1|EX450171
genomic: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTgtatgtcaaa ... tgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGT
EST: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCT TCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTEST: gi|88584803|gb|CI702382.1|CI702382
genomic: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTgtatgtcaaa ... tgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGT
EST: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCATTCAGCT TCTATGAAGTTGCTTTCTACAEST: gi|66924925|gb|CX111773.1|CX111773
genomic: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTgtatgtcaaa ... tgcgttacagTCTATGAAGTTGCTTTCTACA
EST: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCT TCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATEST: gi|38474188|gb|CF958320.1|CF958320
genomic: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTgtatgtcaaa ... tgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGAT
EST: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCT TCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTEST: gi|95100913|gb|CI692635.1|CI692635
genomic: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTgtatgtcaaa ... tgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGT
EST: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCATTCAGCT TCTATGAAGTTGCTTTCTACAAT
genomic: GGACCGGAAAGGAGGACATAAAGGCCATTACTAAAACTGCTCGTTCAGCTgtatgtcaaa ... tgcgttacagTCTATGAAGTTGCTTTCTACAAT
acaaatggattggttctataactaatccatcaacttctccatttctgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTGACAACATTGAGAACACCCTGTCCCTTGCTCTAGTTGACACAGCAAGGC
aactaat putative branch site (score: 112)
cttctccatttctgc putative PPT
tataactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcaaatgctaatatcgtgtctatttgaaacacaaatggattggttctataactaatccatcaacttctccatttctgcgttacagTCTATGAAGTTGCTTTCTACAATGGCTGCAATTCGATTGGATGAGGATGGTGACAACATTGAGAACACCCTGTCCCTTGCTCTAGTTGACACAGCAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG