1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagcttgttcaggaagacttatgcagagaaaaaaatatgcataatgttgatggtttatgcctttaatgtcatcttagttcaaaatcatgtttattcttctccatcacataaacttctatggccatgaagaaatctattttatgtattcttttgtacttgcctgctgtagctaactgaaatgatttcatctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA
species | Oryza sativa |
transcript | LOC_Os01g66330.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAG GTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTEST: gi|25806957|gb|CA762918.1|CA762918
genomic: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAGgttagcttgt ... ctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTT
EST: AGTTAGTCTGACAGCTCTCAATGAAGATCAGCCTGTTCAG GTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTEST: gi|88690979|gb|CI735058.1|CI735058
genomic: AGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAGgttagcttgt ... ctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTT
EST: GCCCATCCTAGTTAGTTTGACAGCTCTCAATNGAAGATCAGCTTGTTCAG GTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTEST: gi|88691601|gb|CI733679.1|CI733679
genomic: GCCCATCCTAGTTAGTTTGACAGCTCTCAAT-GAAGATCAGCTTGTTCAGgttagcttgt ... ctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTT
EST: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAG GTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTEST: gi|88688810|gb|CI732386.1|CI732386
genomic: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAGgttagcttgt ... ctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTT
EST: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAG GTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTEST: gi|84117509|gb|CD151276.1|CD151276
genomic: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAGgttagcttgt ... ctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTT
EST: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAG GTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTT
genomic: TGCCCATCCTAGTTAGTTTGACAGCTCTCAATGAAGATCAGCTTGTTCAGgttagcttgt ... ctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTT
tattcttttgtacttgcctgctgtagctaactgaaatgatttcatctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA
agctaac putative branch site (score: 8)
tttcatct putative PPT
aaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttgttcaggaagacttatgcagagaaaaaaatatgcataatgttgatggtttatgcctttaatgtcatcttagttcaaaatcatgtttattcttctccatcacataaacttctatggccatgaagaaatctattttatgtattcttttgtacttgcctgctgtagctaactgaaatgatttcatctgcattcagGTTCTTACAGAACCAAAGAATTCTCTTTCCAGACAATACAGGAAAATGTTTAGCCTGAACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA