1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatctatggccagttccttgtattgtatatgaagttgaattatttctcaagaacatcttcttctaattgttttcttggaatacatccctcttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCT
species | Oryza sativa |
transcript | LOC_Os01g59440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACCGCGACAACCGCGTCACGCGCCT GGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAEST: gi|29642936|gb|CB647943.1|CB647943
genomic: CGACCGCGACAACCGCGTCACGCGCCTgtgagcgacc ... cttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAA
EST: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCT GGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAEST: gi|58597997|gb|CK008525.1|CK008525
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTgtgagcgacc ... cttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAA
EST: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCT GGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAEST: gi|58678911|gb|CK067598.1|CK067598
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTgtgagcgacc ... cttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAA
EST: TGCACCTGGTTCCACGTCACCTGCGACCGCGAGAACCGCGTCACGCGCCT GGATCTTGGGAATTTGAACTTATCTGGGCATCTGGTGCCTGAGCTTGGAAAEST: gi|218479908|gb|FG956823.1|FG956823
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTgtgagcgacc ... cttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAA
EST: TGCACCTGG-TCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCT GGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTgtgagcgacc ... cttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAA
tctcaagaacatcttcttctaattgttttcttggaatacatccctcttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCT
ttctaat putative branch site (score: 2)
tacatccctcttct putative PPT
taattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatctatggccagttccttgtattgtatatgaagttgaattatttctcaagaacatcttcttctaattgttttcttggaatacatccctcttctaacagGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - -cttgtat
- - - - - - - - - - - - - - - - - - - - - - - - -aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatcc