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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaactactttcttagtgaagtcctatggaattcacatttctttggttgagtattcagttaaagaataacagttggttaatcttgtatgaatttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG

Basic information

species Glycine max
transcript GLYMA16G21510.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 9
gtgagcaactactttcttagtgaagtcctatggaattcacatttctttgg-----------ttgagtattcagttaaagaataaca-----gttggttaatcttgtatgaa----tttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG
|| ||| |||  || |  |   ||     |   ||   | ||   ||              ||| || | ||  |  | |  |||       ||| ||||     |||        || |||||||||| || ||||||||||||||| |||||||  | |||
gtaagccactctttccaaaacaaaagaaaaaaaaaaaaaaatcatttccaagtaaataattttgtgtttccaaattgaaacaaacttctttattgcttaacaaaatattttgcccctttcagGATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgagtattcagttaaagaataacagttggttaatcttgtatgaatttccagGATGGCATGCTATGTTTTGGGCATCCTTAATTCCTGTTGTG
                                                tttcc  CT-rich tract
               ttaaagaataa  TA-rich tract