1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatgtgagaactaaagctgtagagttagatgatggtttttatggtaatattcatcaagcagaataccttctttcttaatcacattttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG
species | Glycine max |
transcript | GLYMA17G01820.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATEST: gi|22928978|gb|BU546117.1|BU546117
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCANNNGATTCAGATGCATCTCTTAATGTTTTGGATCATEST: gi|207689733|gb|GD672840.1|GD672840
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATEST: gi|26058229|gb|CA801143.1|CA801143
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATEST: gi|58014541|gb|CX701283.1|CX701283
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATEST: gi|7925940|gb|AW831966.1|AW831966
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATEST: gi|17518941|gb|BM187983.1|BM187983
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATEST: gi|14999917|gb|BI320731.1|BI320731
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
aatattcatcaagcagaataccttctttcttaatcacattttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG
tttcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtgagaactaaagctgtagagttagatgatggtttttatggtaatattcatcaagcagaataccttctttcttaatcacattttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG
- - - - - - - -gctgtag
- - - - - - - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcaagca