1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaaaagaataagttgacagacagtggtttcattggtagaggtccaccatcattatcttcctaaaggccaaaactaatctgttttatctttttgctgaaagGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAA
species | Glycine max |
transcript | GLYMA20G37330.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAA GTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTT-ATGGGTEST: gi|9564976|gb|BE474476.1|BE474476
genomic: TTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAAgtaagtacta ... ttgctgaaagGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGT
EST: TTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAA GTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTEST: gi|33389731|gb|CA852938.1|CA852938
genomic: TTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAAgtaagtacta ... ttgctgaaagGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGT
EST: TTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAA GTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGT
genomic: TTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAAgtaagtacta ... ttgctgaaagGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGT
ccatcattatcttcctaaaggccaaaactaatctgttttatctttttgctgaaagGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAA
aactaat putative branch site (score: 2)
tctgttttatcttttt CT-rich tract
tgttttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaagaataagttgacagacagtggtttcattggtagaggtccaccatcattatcttcctaaaggccaaaactaatctgttttatctttttgctgaaagGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT