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...tccaaatcctgtagttggatatgcatgctgcttgcttgtgcattcttaaaaaatattttttttataagcaatactaagtattatttatggtgttaaacagCTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCTGTCTGTGTCTGTTTATTGGCTGCAGTGGTGTCTCTTGGATTAGCTCTCT
species | Glycine max |
transcript | GLYMA20G37000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAG CTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCTEST: gi|208263831|gb|GE065239.1|GE065239
genomic: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAGgtcatttttt ... tgttaaacagCTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCT
EST: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAG CTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCTEST: gi|193637354|gb|FK584433.1|FK584433
genomic: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAGgtcatttttt ... tgttaaacagCTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCT
EST: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAG CTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCTEST: gi|21888725|gb|BQ741938.1|BQ741938
genomic: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAGgtcatttttt ... tgttaaacagCTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCT
EST: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAG CTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCT
genomic: CACTTGCATATACTACCATTTCTACCTCAACTCTCAATTCCCCTCATAAGgtcatttttt ... tgttaaacagCTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCT
ttaaaaaatattttttttataagcaatactaagtattatttatggtgttaaacagCTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCTGTCTGTGTCTGTTTATTGGCTGCAGTGGTGTCTCTTGGATTAGCTCTCT
aaatattttttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaatcctgtagttggatatgcatgctgcttgcttgtgcattcttaaaaaatattttttttataagcaatactaagtattatttatggtgttaaacagCTCATAAATGGTGCTCAGTACAAGGCGCCTGCATATATGGGCAGTATTTCTGTCTGTGTCTGTTTATTGGCTGCAGTGGTGTCTCTTGGATTAGCTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - tcctgta
- - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - taaaaaa