1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctattctctacatcccccatttttgatatatcattatgaattttatacgccctgttggacattccattaggcttaagcattgaaatgttgcttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAGCAGATCAGGAAGGGATCTGCATTAGCTTTGGATCCTTCAAAACTATAT
species | Glycine max |
transcript | GLYMA20G32320.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|192303626|gb|FG998636.1|FG998636
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|208166021|gb|GD959081.1|GD959081
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGACCCAATCAGTTAGTTGAEST: gi|207760676|gb|GD733677.1|GD733677
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCG-CCCA-TCAGTTAGTTGA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGAEST: gi|8670136|gb|BE191243.1|BE191243
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|213611330|gb|DB983950.1|DB983950
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|151401597|gb|EV271411.1|EV271411
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAA-GATTGCCTCGCCCATCAGTTAGTTGATGTAGC-AGATAEST: gi|31307751|gb|CD392954.1|CD392954
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCCAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|8670147|gb|BE191254.1|BE191254
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|58017129|gb|CX703871.1|CX703871
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|193307625|gb|FK270639.1|FK270639
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|208308185|gb|GE102837.1|GE102837
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGAEST: gi|6667685|gb|AW279136.1|AW279136
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAEST: gi|7589360|gb|AW705136.1|AW705136
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG GAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGT
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGT
tacgccctgttggacattccattaggcttaagcattgaaatgttgcttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAGCAGATCAGGAAGGGATCTGCATTAGCTTTGGATCCTTCAAAACTATAT
ttgcttttc CT-rich tract
attgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattctctacatcccccatttttgatatatcattatgaattttatacgccctgttggacattccattaggcttaagcattgaaatgttgcttttcacagGAAATTGCCAAAAGATTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAGCAGATCAGGAAGGGATCTGCATTAGCTTTGGATCCTTCAAAACTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - -atccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcca