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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcattctgtgaatacaatcattgttttttttctatctgtaatgagtttcatgtccactttggtattctcgtatcacttcacagcatttacttcagttttaaaaaacttcttatccatttcagCACAAATTCTCTTGGTTTTACCCCAGAGTTTTTGGGACGTGTCAAGCTTGTTACCTCAATTGCATCTCTGCTCGGTGTTGGTCTTTATAATGGATTTCTG

Basic information

species Glycine max
transcript GLYMA20G28510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g07654.1 (Oryza sativa), 3'ss of exon 6
gtatgttcattctgtgaatacaatcattgttttttttctatctgtaatgagtttcatgtccactttggtattctcgtatcacttcacagcatttacttcagttttaaaaaacttcttatccatttcagCACAAATTCTCTTGGTTTTACCCCAGAGTTTTTGGGACGTGTCAAGCTTGTTACCTCAATTGCATCTCTGCTCGGTGTTGGTCTTTATAATGGATTTCTG
          | |||      | ||||| |   |  | | |  || || || |   | || | | || |  | |        || | |    ||  ||   | ||   |    | |||    |||||||||||||   ||||| || || ||||| ||| | |||||||| ||||||||||| || ||||| ||  |||| |||||||| ||||||||    ||||| 
----------tttgt-----tactcattatgaataatttgtgcgtgattagctgtttctcta-tgtgatgcttt--------tttaaaatggttgattttttcttgtta----tgttaatgttttcagCACAAATAAGCTTGGGTTCACGCCAGAATTTCTAGGACGTGTAAAGCTTGTTACATCTATTGCTTCATTGCTTGGTGTTGGGCTTTATAACTATTTTCTA

upper sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 7
lower sequence: AC197016.3_FGT003 (Zea mays), 3'ss of exon 1
gtatgttcattctgtgaatacaatcattgttttttttctatctgtaatgagtttcatgtccactttggtattctcgtatcacttcacagcatttacttcagttttaaaaaacttc--ttatccatttcagCACAAATTCTCTTGGTTTTACCCCAGAGTTTTTGGGACGTGTCAAGCTTGTTACCTCAATTGCATCTCTGCTCGGTGTTGGTCTTTATAATGGATTTCTG
                           ||||| || |||   ||   || ||||  | || ||| |  |||| |   || | |  | |   || ||| |  |||     |  ||   | ||  ||||||||||||||   ||||| || || ||||||||| | || ||||| |||||||| |||||| ||||||| |||||| ||||||| || || ||    ||||||
---------------------------tgtttcttgtctgattgct-tgtgtttt-tatctactgtt-tattttataatgaataaaaactgttaactactttttatcttatgttgaataatatatttcagCACAAATAAGCTTGGATTCACACCAGAGTTTCTAGGGCGTGTGAAGCTTGTAACCTCATTTGCATCCCTGCTCTGTGTTGGGCTCTACAACTATTTTCTG

upper sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G469469_T01 (Zea mays), 3'ss of exon 6
gtatgttcattctgtgaatacaatcattgttttttttctatctgtaatgagtttcatgtccactttggtattctcgtatcacttcacagcatttacttcagttttaaaaaacttc--ttatccatttcagCACAAATTCTCTTGGTTTTACCCCAGAGTTTTTGGGACGTGTCAAGCTTGTTACCTCAATTGCATCTCTGCTCGGTGTTGGTCTTTATAATGGATTTCTG
                            || | || |||   ||   ||  |||  | || ||| |  |||| |   || | |  | |  ||| ||| |  |||     |  ||   | ||  ||||||||||||||   ||||| || || ||||||||| | || ||||| |||||||| |||||  ||||||| |||||||||||||| || || ||    ||||||
----------------------------gtctcttgtctgattgct-tgtattttttatctactgtt-tattttataatgaataaaaactattaactactttttatcttatgttgaataatatatttcagCACAAATAAGCTTGGATTCACACCAGAGTTTCTAGGGCGTGTGAAGCTTGTAACCTCCTTTGCATCCCTGCTCGGTGTTGGGCTCTACAACTATTTTCTG

upper sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G32040.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgttcattctgtgaatacaatcattgttttttttctatctgtaatgagtttcatgtccactttggtattctcgtatcacttcacagcatttacttcagttttaaaaaacttcttatccatttcagCACAAATTCTCTTGGTTTTACCCCAGAGTTTTTGGGACGTGTCAAGCTTGTTACCTCAATTGCATCTCTGCTCGGTGTTGGTCTTTATAATGGATTTCTG
|||||| |  |||   | |    ||||   ||  |   |||   |      |||||| |   || ||| ||      |  | |    | |  | | || | ||   | ||| |||      |  |||| || ||    || ||||||||||| |||||| ||||||| || || ||||| ||||||||||| ||  |||| || || || || || |||||||| |||
gtatgtcc--tcttccacttggttcatgccttcatggttat---tggcttatttcatatt--ctctggaatgtattaactagtctctaac--taattttatttggtacaaatttc------acctcagAACGAACAAACTCGGTTTTACCCCGGAGTTTCTGGGACGAGTTAAACTTGTGACCTCAATTGCCTCATTGCTTGGAGTAGGACTGTACAATGGATTCCTG

upper sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g03660.t01 (Vitis vinifera), 3'ss of exon 6
gtatgttcattctgtgaatacaatcattgtttttttt-ctatctgtaatgagtttcatgtccactttggtattctcgtatcacttcacagcatttactt-cagttttaaaaaacttcttatccatttcagCACAAATTCTCTTGGTTTTACCCCAGAGTTTTTGGGACGTGTCAAGCTTGTTACCTCAATTGCATCTCTGCTCGGTGTTGGTCTTTATAATGGATTTCTG
||||||| | ||  ||| |   |  ||| |    ||  || || || ||    | |   | |   |||| |   ||  || | |||  ||||| | ||| || | |||| ||      |    ||||||||||||||   |||||||| |||||||| ||||| |||||||||||||||||||| ||  | ||||| ||  | |||||||| || |||||||| ||| ||
gtatgttgaatccttgattgtgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcagCACAAATAGACTTGGTTTCACCCCAGAATTTTTAGGACGTGTCAAGCTTGTTACTTCGGTGGCATCACTAATTGGTGTTGGACTGTATAATGGGTTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtatcacttcacagcatttacttcagttttaaaaaacttcttatccatttcagCACAAATTCTCTTGGTTTTACCCCAGAGTTTTTGGGACGTGTCAAGCTTGTTACCTCAATTGCATCTCTGCTCGGTGTTGGTCTTTATAATGGATTTCTG
                                      cttcttatccatttc  CT-rich tract
                 atttacttcagtttta  TA-rich tract