1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtgaataaaaaacttgcatgttatatcctaagatgtgagtagattcagttctatgtaatatgcatgcatttttacttttgtctacttattatatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGG
species | Glycine max |
transcript | GLYMA16G25740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCEST: gi|208029746|gb|GD829660.1|GD829660
genomic: CCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGC
EST: CCACTATTGATGATGTTTTGATAGGATTGGCAAAATGGCTTTGTGATCAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCEST: gi|17518712|gb|BM187754.1|BM187754
genomic: CCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGC
EST: CCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCEST: gi|7925310|gb|AW831397.1|AW831397
genomic: CCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGC
EST: CCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCEST: gi|193728323|gb|FK665093.1|FK665093
genomic: CCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGC
EST: CACTATTGATGATGTTTTGATAGGATTGGTAAAAATGGCTTTGTGATCAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGC
genomic: CACTATTGATGATGTTTTGATAGGATTGGTAAAA-TGGCTTTGTGATCAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGC
cagttctatgtaatatgcatgcatttttacttttgtctacttattatatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGG
atttttacttttgtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaataaaaaacttgcatgttatatcctaagatgtgagtagattcagttctatgtaatatgcatgcatttttacttttgtctacttattatatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -taaaaaa
- - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - ctatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgca