Sequence
atgc intronic sequence ATGC exonic sequence...tgtggtgcttttgcacaaccaattgaatttgttattatgaactttcaagtggtttaaagaccacagacatcagactcatctgacaatttgttctttgaagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAG
Basic information
species | Glycine max |
transcript | GLYMA15G40750.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G40750.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G117900_T02 (Zea mays), 3'ss of exon 7
tgtggtgcttttgcacaaccaattgaatttgttattatga-actttcaagtggtttaaagaccacagacatcagactcatctgacaatttgttctttgaagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAG
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--------gtatgtatatcttagtcatggtgctaccattctgttctccattatgtttaa---tatgaacaaaa--------tagcaatggttttgctacagGGAGTTCTTAGGGTGAACCAGAAGATTGAAGTTCGCCCTGGCATTGTTATGAAAGATGAGAATGGAAACATTAAGTGCACGCCAATCTACTCAAGGATTG
upper sequence: GLYMA15G40750.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0074g00310.t01 (Vitis vinifera), 3'ss of exon 7
-----tgtggtgcttttgcacaaccaattgaatttgttattatgaactttcaagtggtttaaagaccacagacatcagactcatctgacaatttgttctttgaagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAG
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aaagcagctgttactttctggaaatatcagactttaggagttaggcatctcaaatatcttttat-ttgcaaatacca----catttgacattttgttcttggcagGGTGTTTTGAAAGTAAATCAGTTTATTGAGGTTCGTCCTGGAATTGTTGTTAAAGATGAGAACGGGAACATCAAATGCACACCAATATATTCTAGGATAG
upper sequence: GLYMA15G40750.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0042g01220.t01 (Vitis vinifera), 3'ss of exon 6
tgtggtgcttttgcacaaccaattgaatttgttattatgaactttcaagtggtttaaagaccacagacatcagact----catctgacaatttgttctttgaagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAG
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----tttttttttttttttttctggaaatagatatctttaggaattgggcatctcagatatcttttatttttgaataccacatttgacattatgttcttggcagGGTGTTTTGAAAGTGAATCAGTTTATTGAGGTTCGTCCTGGGATTGTTGTTAAAGATGAGAATGGGAACATCAAATGCACACCAATATATTCTAGGATAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagtggtttaaagaccacagacatcagactcatctgacaatttgttctttgaagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAG
atctgac putative branch site (score: 3)
tttgttcttt putative PPT
tttaaaga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtggtgcttttgcacaaccaattgaatttgttattatgaactttcaagtggtttaaagaccacagacatcagactcatctgacaatttgttctttgaagGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
tgtggtg
- - - - - - -cacaacc
- - - - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - -caagtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacagac