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...tcaatcatttcccagtttcttaatttcagaagttttccccaaaacataaggatttctagtctctgtttttctgactgatgatctgctgttgaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAA
species | Glycine max |
transcript | GLYMA20G37330.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACA GAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGEST: gi|9564976|gb|BE474476.1|BE474476
genomic: GTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACAgtgagttctt ... gaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTG
EST: GTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACA GAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGEST: gi|19054297|gb|BM732964.1|BM732964
genomic: GTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACAgtgagttctt ... gaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTG
EST: ATAGGTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACA GAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGEST: gi|33389731|gb|CA852938.1|CA852938
genomic: ATAGGTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACAgtgagttctt ... gaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTG
EST: GTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACA GAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGEST: gi|151393400|gb|EV263275.1|EV263275
genomic: GTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACAgtgagttctt ... gaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTG
EST: GTTCATATGGAGAGGTATACCGTGCCGACTGGAATGGCACA GAGGTTGCTGTGAAGAAGTTTTTGGATCAGGATTTTTCAGGTGCTGCATTG
genomic: GTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACAgtgagttctt ... gaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTG
ataaggatttctagtctctgtttttctgactgatgatctgctgttgaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAA
ttgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatcatttcccagtttcttaatttcagaagttttccccaaaacataaggatttctagtctctgtttttctgactgatgatctgctgttgaaatatcagGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - ttcccag
- - - - - - - - - - - - - - - - -tttcccc
- - - - - - - - - - - - - - - - - - - - aaaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctgt