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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctatcatgaattgattttattctttaagcattaggaattccatgtgcctcataatgttgtattttctgcagAATCAGGGATACTTTGGTTCCTGTTATAGAACCTCACTATGTGATCATGTCAGACACCTTTATTACAGGATTAAATCAGGGGGGCCACTTGCATATACTA

Basic information

species Glycine max
transcript GLYMA20G37000.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208263831|gb|GE065239.1|GE065239
EST:     ATCGTTCATTTCTAAAG                         AATCAGGGATACTTTGGTTCCTGTTATAGAACCTCACTATGTGATCATGTC
genomic: ATCGTTCATTTCTAAAGgtcagctatc ... ttttctgcagAATCAGGGATACTTTGGTTCCTGTTATAGAACCTCACTATGTGATCATGTC
EST: gi|21888725|gb|BQ741938.1|BQ741938
EST:     GCTACCATTTTGTGCTGTGCTGTTCTGCTGCTATCGTTCATTTCTAAAG                         AATCAGGGATACTTTGGTTCCTGTTATAGAACCTCACTATGTGATCATGTC
genomic: GCTACCATTTTGTGCTGTGCTGTTCTGCTGCTATCGTTCATTTCTAAAGgtcagctatc ... ttttctgcagAATCAGGGATACTTTGGTTCCTGTTATAGAACCTCACTATGTGATCATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattctttaagcattaggaattccatgtgcctcataatgttgtattttctgcagAATCAGGGATACTTTGGTTCCTGTTATAGAACCTCACTATGTGATCATGTCAGACACCTTTATTACAGGATTAAATCAGGGGGGCCACTTGCATATACTA
                                           tattttct  CT-rich tract
                                  ataatgttgtatttt  TA-rich tract