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gtaaggttttaggtttatagatggaggaaagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCCATTCTTTCTTGGTCAATTCAGCTGG
species | Glycine max |
transcript | GLYMA19G36080.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|19270064|gb|BM886320.1|BM886320
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|213594334|gb|DB969984.1|DB969984
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCACAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGGEST: gi|207782854|gb|GD752409.1|GD752409
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|209709199|gb|BW657168.1|BW657168
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|213590581|gb|DB973326.1|DB973326
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|13252020|gb|BG362914.1|BG362914
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTACAGAATGCTCTTGGTAAATTTGCTGATGGGCEST: gi|7234135|gb|AW569475.1|AW569475
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTATAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|213600537|gb|DB960085.1|DB960085
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|209727125|gb|BW663267.1|BW663267
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|9204038|gb|BE330262.1|BE330262
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|208317705|gb|GE112370.1|GE112370
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|209701114|gb|BW652642.1|BW652642
genomic: CCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|19452928|gb|BM954338.1|BM954338
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|19934788|gb|BQ079818.1|BQ079818
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCEST: gi|298180090|gb|HO025305.1|HO025305
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
aagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCCATTCTTTCTTGGTCAATTCAGCTGG
aattaac putative branch site (score: 2)
aattaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttttaggtttatagatggaggaaagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCCATTCTTTCTTGGTCAATTCAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG