1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaatataatgccacatggcagatatgtactgagctgttttactgatcttgctgttgctaatatgtatcaacatcctaatgaaacattaatttttccaggGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCTATGGAACTTCTCGACAAAGTGAACCAGCAAATTCAGGATCCCAGGGGGC
species | Glycine max |
transcript | GLYMA18G47660.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTCTACCTCAGGGAATGGTTTCAGTGTCTGGGTGGAGTGCATACAGTG GTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCTEST: gi|254342369|gb|GR858531.1|GR858531
genomic: AATTCTACCTCAGGGAATGGTTTCAGTGTCTGGGTGGAGTGCATACAGTGtaagctcatc ... tttttccaggGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCT
EST: AATTCTACCTCAGGGAATGGTTTCAGTGTCTGGGTGGAGTGCATACAGTG GTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGGCCAAAGCEST: gi|214009647|gb|DB987931.1|DB987931
genomic: AATTCTACCTCAGGGAATGGTTTCAGTGTCTGGGTGGAGTGCATACAGTGtaagctcatc ... tttttccaggGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGG-CCAAAGC
EST: CTACCTCAGGGAATGGTTTCAGTGTCTGGGTGGAGTGCATACAGTG GTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCT
genomic: CTACCTCAGGGAATGGTTTCAGTGTCTGGGTGGAGTGCATACAGTGtaagctcatc ... tttttccaggGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCT
atcttgctgttgctaatatgtatcaacatcctaatgaaacattaatttttccaggGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCTATGGAACTTCTCGACAAAGTGAACCAGCAAATTCAGGATCCCAGGGGGC
tttttcc CT-rich tract
taatgaaacattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatataatgccacatggcagatatgtactgagctgttttactgatcttgctgttgctaatatgtatcaacatcctaatgaaacattaatttttccaggGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGCAAATGGCCAAAGCTATGGAACTTCTCGACAAAGTGAACCAGCAAATTCAGGATCCCAGGGGGC
- - - - -tgccaca
- - - - - - - - - - - -tatgtac
- - - - - - - - - - - - - - - - -gctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaca