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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcattactgatcaactcgagatcactgcaatgcactattcttcatgttgattattggcttgtttgaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAAATTGCCAAGTTAAGCGGTGGTGTGATAATATCTAAACTGTTAAACTATC

Basic information

species Glycine max
transcript GLYMA18G10430.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283980|gb|BE021539.1|BE021539
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|120495927|gb|EH224094.1|EH224094
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192311633|gb|FK003550.1|FK003550
EST:     TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192315959|gb|FK007092.1|FK007092
EST:     GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|207795207|gb|GD767758.1|GD767758
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192311632|gb|FK003549.1|FK003549
EST:     TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: TGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|21888834|gb|BQ742047.1|BQ742047
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|192315960|gb|FK007093.1|FK007093
EST:     GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAG                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
genomic: GGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA
EST: gi|27446264|gb|CA953387.1|CA953387
EST:     GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAC                         GCATATTACTTGGCTCTTCCTTTTCCAATTGAGAACGCCCCTACTAAGAAA
genomic: GTTACAACAGCTTGGGTGCATTTGCAACCATTAACCATCTCCACTTTCAGgtactcatta ... acaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattagtgttctagcagtattcaaattgacattttgtgattttgacaaacccagGCATATTACTTGGCTCTTCCTTTTCCAATTGAGAAGGCCCCTACTAAGAAAATTGCCAAGTTAAGCGGTGGTGTGATAATATCTAAACTGTTAAACTATC
                                        ttttgac  putative branch site (score: 3)
                  tattcaaatt  TA-rich tract