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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagttagaagtcacggatccctacaagagcataactagttgaacatatgtgcattcattgcatcttaaactcagcaggattgttgttctcacgtatattttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGTGATGAACATCTTTACAAAGCAT

Basic information

species Glycine max
transcript GLYMA17G01730.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208036079|gb|GD836066.1|GD836066
EST:     GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: gi|51338304|gb|CO982170.1|CO982170
EST:     NAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: gi|192302488|gb|FG994810.1|FG994810
EST:     GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: gi|7685078|gb|AW755726.1|AW755726
EST:     GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: gi|46492915|gb|CN472471.1|CN472471
EST:     GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGANATGGG
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGG
EST: gi|9565244|gb|BE474753.1|BE474753
EST:     GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: gi|298191902|gb|HO035984.1|HO035984
EST:     GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
EST: gi|192302489|gb|FG994811.1|FG994811
EST:     GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCG                         GCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT
genomic: GAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGgtaagtagtt ... tttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgcatcttaaactcagcaggattgttgttctcacgtatattttttctcagGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGTGATGAACATCTTTACAAAGCAT
                                ttctcac  putative branch site (score: 2)
                                          tattttttctc  putative PPT
                                        tatattttttctca  TA-rich tract