Sequence
atgc intronic sequence ATGC exonic sequencegtaaatcttccaatccctcttatccctctatgcaatatgcatttccttgtctttttctggcttcagtgttgctgatagtatttttgtatttttgttatagGCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAAGATGTGATAGCAATCAGTCAACCCCTGCTAGTAATGCTCCTGTTACAAAT
Basic information
species | Glycine max |
transcript | GLYMA16G33570.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G33570.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G73350.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatcttccaatccctcttatccctctatgcaatatgcatttccttgtctttttctggcttcagtgttgctgatagtatttttgtatttttgttatagGCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAA-GATGTGATAGCAATCAGTCAACCCCTGCTAGTAATGCTCCTGTTACAAAT---
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gtggaaaatcccttcctttcca-ccttattcacaccatgaattggattttcattcggtgac--caacttttgtgt--gtgttttccaatgtct-----agGCAGCAAGATTTGCTGAGGAAAGTTGTAGAGGTTAAACCTAAACGTCCAAAGATCTCAACACCATCA---AGCCCAAGCTTATC-TCCCCCTGTTAGAAGTGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192298082|gb|FG991362.1|FG991362EST: TCAGTACCTCTGGCATTTCGGGTTGAGCCGAAACCCAAAAGTGGGATCAG GCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAAG
genomic: TCAGTACCTCTGGCATTTCGGGTTGAGCCGAAACCCAAAAGTGGGATCAGgtaaatcttc ... tttgttatagGCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgtctttttctggcttcagtgttgctgatagtatttttgtatttttgttatagGCAGCAAGATTTGCTGAAGAAAGTCGTTGAGATTAAACCTAAGCGGCCAAGATGTGATAGCAATCAGTCAACCCCTGCTAGTAATGCTCCTGTTACAAAT
tgctgat putative branch site (score: 3)
tttttgtt putative PPT
tgatagtatttttgta TA-rich tract