1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agaattgggcctttccactcctcgggcacttattatgttgtctgtattgttgaagatactatctaactatgtttaatattttttactaatggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCATAGCAGCATTGAGGGGTTATAAACTTCAGGTGACTATGCCGTCTTACG
species | Glycine max |
transcript | GLYMA20G37280.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCEST: gi|308098448|gb|HO760189.1|HO760189
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: GAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAGAAG ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTEST: gi|17400150|gb|BM176932.1|BM176932
genomic: GAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGA-AAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATT
EST: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCEST: gi|9259980|gb|BE348127.1|BE348127
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCEST: gi|254340198|gb|GR858323.1|GR858323
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
attgttgaagatactatctaactatgtttaatattttttactaatggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCATAGCAGCATTGAGGGGTTATAAACTTCAGGTGACTATGCCGTCTTACG
tactaat putative branch site (score: 1)
atactatctaactatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaattgggcctttccactcctcgggcacttattatgttgtctgtattgttgaagatactatctaactatgtttaatattttttactaatggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTCATAGCAGCATTGAGGGGTTATAAACTTCAGGTGACTATGCCGTCTTACG
- - - - -cctttcc
- - - - - - - - -ctcctcg
- - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - -tgttgaa