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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtgaaagctatgttaaatgtagtggtcaagtttttctgatacaattgcttgtgcttaagttgtatgtattcttctgtttccccttgaccaatgaatacAGAGCTGCAAGTTTAGCAGATTCTTCACCCACCTCAGTACCTCTGGCATTTCGGGTTGAGCCGAAACCCAAAAGTGGGATCAG

Basic information

species Glycine max
transcript GLYMA16G33570.2
intron # 4
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33570.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0039g00280.t01 (Vitis vinifera), 3'ss of exon 5
ttgtgaaagctatgttaaatgtagtggtcaagtttttctgatacaattgcttgtgcttaagttgtatgtattcttctgtttccccttgaccaatgaatacAGAGCTGCAAGTTTAGCAGATTCTTCACCCACCTCAGTACCTCTGGCATTTCGGGTTGAGCCGAAACCCAAAAGTGGGATCAG
                                          |  |   ||||     ||   |  | |  |||  |  |   |||| |  ||     ||| |||||||||||||||||||||||||||  |  | || ||  || |  |||| |||||||| || || || |||||||| ||
----------------------------------------gcatgacc-cttgga---aaccagagtatggtctctttctcttccttaattaactggcacaaagctgcaagTTTAGCAGATTCTTCACCGGCAACGGTTCCCTTGCCCCTTCGTGTTGAGCCCAAGCCAAAGAGTGGGATTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298082|gb|FG991362.1|FG991362
EST:     CAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAG                         AGAGCTGCAAGTTTAGCAGATTCTTCACCCACCTCAGTACCTCTGGCATTT
genomic: CAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatcctttt ... caatgaatacAGAGCTGCAAGTTTAGCAGATTCTTCACCCACCTCAGTACCTCTGGCATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcttgtgcttaagttgtatgtattcttctgtttccccttgaccaatgaatacAGAGCTGCAAGTTTAGCAGATTCTTCACCCACCTCAGTACCTCTGGCATTTCGGGTTGAGCCGAAACCCAAAAGTGGGATCAG
                                    ccccttgac  putative branch site 
                         ttcttctgtttcccct  CT-rich tract
                   tatgtatt  TA-rich tract