1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgagttttggcctttgtctaattcttattttgtgattcagccctcttgcccttgtcatgtgcttttcggttttgtgctgagtggtttcaattttctaatttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGACAACTTTTCAAAAATTGAATCTCCTGAGGAGTCTT
species | Glycine max |
transcript | GLYMA18G10120.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCAGAGAATTCGAAAAAATTTGCTATACAG AATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCEST: gi|10236123|gb|BE804941.1|BE804941
genomic: TGAAGCAGAGAATTCGAAAAAATTTGCTATACAGgtctgagttt ... tttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCC
EST: TGGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAG AATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCEST: gi|21888782|gb|BQ741995.1|BQ741995
genomic: TGGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAGgtctgagttt ... tttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCC
EST: AAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAG AATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCEST: gi|151398178|gb|EV268056.1|EV268056
genomic: AAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAGgtctgagttt ... tttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCC
EST: TGGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAG AATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCEST: gi|18725729|gb|BM523638.1|BM523638
genomic: TGGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAGgtctgagttt ... tttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCC
EST: GGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACTTT ATTTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCEST: gi|193640250|gb|FK590969.1|FK590969
genomic: GGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATAC-AGgtctgagttt ... tttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTC
EST: TGGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAG AATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCC
genomic: TGGATAGGACAAGACGTGAAGCAGAGAATTCGAAAAAATTTGCTATACAGgtctgagttt ... tttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCC
gtcatgtgcttttcggttttgtgctgagtggtttcaattttctaatttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGACAACTTTTCAAAAATTGAATCTCCTGAGGAGTCTT
tttcaattttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgagttttggcctttgtctaattcttattttgtgattcagccctcttgcccttgtcatgtgcttttcggttttgtgctgagtggtttcaattttctaatttgatgtagAATTTTGCAAAGAGTTTACTAGACGTTGCTGATAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGACAACTTTTCAAAAATTGAATCTCCTGAGGAGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG