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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatgcactttaccaattcctgctgtttatttgatactgattcgtgaaatatgatttatgtcatttatttgttcttatgctaatggaggccactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC

Basic information

species Glycine max
transcript GLYMA12G00830.5
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00830.5 (Glycine max), 3'ss of exon 3
lower sequence: AT5G61500.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------gaatgcactttaccaattcctgctgtttatttgatactgattcgtgaaatatgatttatgtcatttatttgttcttatgct-aatggaggccactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC
             |  || | ||| ||  |      | |||   |  | |  |||  ||   |   |    |    || |  | ||   |||||  |   |||| ||||||||||| || ||||| || ||||||||||||||||||||||| ||||| ||||||||||| || ||| ||||||| ||
atgatttggctgtgtgtgtattttgcctttaaagcatatttccattttcccaatttttg--gttctaccagtagttttaaactttttacatgcttgactcagGCAACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACTCGGACATATGATCTCAGCATAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408115|gb|EV277923.1|EV277923
EST:     TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT                         TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
EST: gi|19346154|gb|BM891034.1|BM891034
EST:     TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT                         TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
EST: gi|21887729|gb|BQ740942.1|BQ740942
EST:     TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT                         TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatatgatttatgtcatttatttgttcttatgctaatggaggccactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC
                                tgctaat  putative branch site (score: 2)
                                            ccactcttc  putative PPT
        atttatgtcatttatt  TA-rich tract