1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tatctttctattagattctgtctgtttactttgtagtaattgagacagtctataaagtaatccattaaatgagatatgatttattcattttaactgatagGTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATACTGGATATCACCAGATGTCTTTATGATGCCATAACTAGGATGGAGAGGGC
species | Glycine max |
transcript | GLYMA08G00560.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATCGTCCAAG GTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATACEST: gi|193624002|gb|FK573868.1|FK573868
genomic: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAGgttagcttca ... taactgatagGTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATAC
EST: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAG GTAAATTCAGGCAEST: gi|11687838|gb|BF595514.1|BF595514
genomic: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAGgttagcttca ... taactgatagGTAAATTCAGGCA
EST: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAG GTAAATTCAAGCACCTGCCTGTTGTGGAAAATGGTGAAGTGATTGCCATACEST: gi|207703471|gb|GD686201.1|GD686201
genomic: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAGgttagcttca ... taactgatagGTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATAC
EST: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAG GTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATACEST: gi|254333299|gb|GR850549.1|GR850549
genomic: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAGgttagcttca ... taactgatagGTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATAC
EST: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAG GTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATAC
genomic: TGTGACATCTGACATGCTAGCTTTAGAAGCTCTTCAGAAGATGGTCCAAGgttagcttca ... taactgatagGTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATAC
cagtctataaagtaatccattaaatgagatatgatttattcattttaactgatagGTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATACTGGATATCACCAGATGTCTTTATGATGCCATAACTAGGATGGAGAGGGC
ttttaac putative branch site (score: 2)
ttcatttt CT-rich tract
attaaatgagatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctttctattagattctgtctgtttactttgtagtaattgagacagtctataaagtaatccattaaatgagatatgatttattcattttaactgatagGTAAATTCAGGCACCTCCCTGTTGTGGAAAATGGTGAAGTGATTGCCATACTGGATATCACCAGATGTCTTTATGATGCCATAACTAGGATGGAGAGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG