Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccgtgcaatgctttgctgtgtccgttctcagcattatcatgcaatcgtttccattgttaatcaatagcaaattaaagatgcttccttgctctgaatcgtgtatgtttctcaattttgtgaagCTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG

Basic information

species Glycine max
transcript GLYMA20G36400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302643|gb|FG996337.1|FG996337
EST:     ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGAC                         CTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
genomic: ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGACgtaagttccg ... ttttgtgaagCTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
EST: gi|151399393|gb|EV269264.1|EV269264
EST:     ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGAC                         CTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
genomic: ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGACgtaagttccg ... ttttgtgaagCTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
EST: gi|151397805|gb|EV267678.1|EV267678
EST:     ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGAC                         CTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
genomic: ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGACgtaagttccg ... ttttgtgaagCTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
EST: gi|192326003|gb|FK016890.1|FK016890
EST:     ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGAC                         CTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
genomic: ATCTTCCTTCCGATTACTTTTCAAAGCTTCCCGGCGATCTTCGATTAGACgtaagttccg ... ttttgtgaagCTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattaaagatgcttccttgctctgaatcgtgtatgtttctcaattttgtgaagCTAAACGACGCGGCGTTCGACCTTTCAAACGGACCTGTTTTAGATGAG
                                         tcaatttt  TA-rich tract