1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatacaccttcctctctctctctctctctctcttttttttttttataaggaaaatgctacatgttatataatgtttaaatatgtatatttgtttcattattgtgagctggtgacagGTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG
species | Glycine max |
transcript | GLYMA20G35830.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTGCCGGATATGCTGTTTTCAAAGAGCTTATTTTTCAACCTAAGGA GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAGEST: gi|6071913|gb|AW101300.1|AW101300
genomic: GCTGCTGCCGGATATGCTGTTTTCAAAGAGCTTATTTTTCAACCTAAGGAgtatacacct ... ctggtgacagGTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG
EST: GCTGCTGCCGGATATGCTGTTTTCAAAGAGCTTATTTTTCAACCTAAGGA GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAGEST: gi|19053838|gb|BM732505.1|BM732505
genomic: GCTGCTGCCGGATATGCTGTTTTCAAAGAGCTTATTTTTCAACCTAAGGAgtatacacct ... ctggtgacagGTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG
EST: GCTGCTGCCGGATATGCTGTTTTCAAAGAGCTTATTTTTCAACCTAAGGA GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG
genomic: GCTGCTGCCGGATATGCTGTTTTCAAAGAGCTTATTTTTCAACCTAAGGAgtatacacct ... ctggtgacagGTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG
tgttatataatgtttaaatatgtatatttgtttcattattgtgagctggtgacagGTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG
tataatgtttaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacaccttcctctctctctctctctctctcttttttttttttataaggaaaatgctacatgttatataatgtttaaatatgtatatttgtttcattattgtgagctggtgacagGTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG