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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaccatttaattaactatctttcctctgatcgtcactttcactccaaatgtcgtctaaactttttccttcttctcactccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT

Basic information

species Glycine max
transcript GLYMA20G28320.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588328|gb|AW704126.1|AW704126
EST:     GTTACTTTGCAGGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGG                         TTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
genomic: GTTACTTTGCAGGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGgtgagaacca ... ctccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
EST: gi|10847500|gb|BF070178.1|BF070178
EST:     GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGG                         TTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
genomic: GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGgtgagaacca ... ctccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
EST: gi|16995575|gb|BM084947.1|BM084947
EST:     CCGCAGAGGAGTACCATGG                         TTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
genomic: CCGCAGAGGAGTACCATGGgtgagaacca ... ctccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
EST: gi|7924108|gb|AW830134.1|AW830134
EST:     GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGG                         TTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
genomic: GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGgtgagaacca ... ctccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
EST: gi|7458621|gb|AW666071.1|AW666071
EST:     GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGG                         TTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
genomic: GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGgtgagaacca ... ctccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
EST: gi|4313511|gb|AI460630.1|AI460630
EST:     GATATCACCGCAGAGGAGTACCATGG                         TTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
genomic: GATATCACCGCAGAGGAGTACCATGGgtgagaacca ... ctccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
EST: gi|23734136|gb|BU765291.1|BU765291
EST:     GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGG                         TTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT
genomic: GCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGgtgagaacca ... ctccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcactttcactccaaatgtcgtctaaactttttccttcttctcactccaaccagTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT
                                       ttctcac  putative branch site (score: 2)
                      tctaaactttttcctt  CT-rich tract
                        taaacttttt  TA-rich tract